Changes between Version 12 and Version 13 of BGIDatasets


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Timestamp:
Aug 18, 2011 9:30:20 PM (11 years ago)
Author:
laurent
Comment:

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  • BGIDatasets

    v12 v13  
    2626
    2727== BGI file format ==
    28 BGI delivered all its data in both the raw format from the tools they are using as well as a vcf version. Below is a summary of the data and formats along with possible notes and/or know caveats.
     28BGI delivered all its data in both the raw format from the tools they are using as well as a vcf version. Below is a summary of the data and formats along with possible notes and/or know caveats. Note that unless specified otherwise, all data is aligned on hg19.
    2929
    3030 * Alignment data
     
    4848     * Some files do not have a proper sample name set (only SAMPLE). This is usually problematic for any program that works on multiple VCF files at the same time.
    4949     * The filter column is either always 0 or always PASS; in both cases it just means that all the SNPs passed the filtering steps and hence does not give any information about unfiltered SNPs.
    50 
    5150= Overview BGI datasets'''''''''' =
    5251TODO: More info on statistic and how to access the dataset will be added here. BGI will shared with us: SNP calling results (VCF), SOAP format for indels.