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BBMRI omics Hands-on Course
date: March 31, 2017
Location: SURFsara, Utrecht
BBMRI url: https://www.bbmri.nl/event/bbmri-omics-introduction-and-hands-on-application/
Program
10:00-10:30 Introduction to available omics data within BBMRI-omics.nl. Description of RNA-seq, 450k methylation, metabolomics, imputed genotypes, phenotypes and technical covariates. Data location and access. (Rick Jansen)
10.30-11.15: Introduction to R package BIOSRutils. How to use BIOSRutils for filtering and QC, and finally run EWAS and TWAS (Maarten van Iterson)
11.15-12.15: Practicum (Maarten van Iterson)
12.15-13.15: Lunch (demo: using BBMRI-Omics.nl online atlases (Jan-Bert van Klinken))
13.15-13.45: Joost Verlouw: QTL lookup of GWAS hits. Take the SNP hits from a recent GWAS, extract corresponding BIOS genotype data, run association with full Methylation, Expression and Metabolomics data sets.
13.45-14.45: Practicum (Joost Verlouw)
14.45-15.15- Tea break
15:15-15:45: Introduction to the Brainshake 1H-NMR metabolomics platform (Marian Beekman)
15:45-16.30: Practicum. Analyzing Metabolomics data (Koen Dekker)
16:30-17:00: Allele specific expression (Niek de Klein & Freerk van Dijk) 17:00-17:45: Practicum (Niek de Klein & Freerk van Dijk))
18:00 Drinks
Practicum guidelines and exercises
Attachments (6)
-
BBMRIomics.pdf (749.4 KB) - added by 8 years ago.
BBMRIomics introduction (Maarten van Iterson)
- 20170331_QTL_Lookup_&_Analysis.pdf (660.4 KB) - added by 8 years ago.
- Beekman_BBRMI_MetabolomicsConsortium.pdf (3.2 MB) - added by 8 years ago.
- presentation_QTL_browser1.pptx (1.6 MB) - added by 8 years ago.
- aseWorkshop_final.pdf (302.5 KB) - added by 8 years ago.
- Rick Jansen BBMRI omics.pdf (666.9 KB) - added by 8 years ago.
