Changes between Version 1 and Version 2 of BIOS_FileBackups

Timestamp:

Sep 28, 2016 10:37:39 PM (8 years ago)

Author:

Leon Mei

Comment:

--

BIOS_FileBackups

@@ -12 +12 @@
 == RNAseq ==
 ====  Raw data from ErasmusMC ====
-  * Files: <flowcell ID>-<lane ID>-<index ID>_R1.fq.gz, <flowcell ID>-<lane ID>-<index ID>_R2.fq.gz, <flowcell ID>-<lane ID>-<index ID>-remaining.tar.gz
+  * Files: <flowcell ID>-<lane ID>-<index ID>_R1.fq.gz, <flowcell ID>-<lane ID>-<index ID>_R2.fq.gz
   * Location 
-   * srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/RNASeq
+   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/RNASeq/
   * Backup log
-   * 2014-01-21: 4888 files are backed up. only fastq files. 2444 samples? Adler checksum is verified but not md5. 
+   * xxx files are backed up. MD5 checksum are verified. From MDB.
 
 ==== Results of standard analysis using LSG pipeline ====
   * Files: *.exon.count, *.transcript.count, *.gene.count, *.sorted.bam, *.run.log.
   * Location
-  * Backup log
-   * 
+   * Freeze 1 pipeline: srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/production/5ddcae7/
 
 == Methylation ==
@@ -28 +27 @@
   * Files: <biobank>_sample_sheet.csv, *.idat
   * Location 
-   * srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/IlluminaHumanMethylation450k/LL_sample_sheet.csv 
-   * srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/IlluminaHumanMethylation450k/9285451044/9285451044_R03C02_Grn.i
+   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/IlluminaHumanMethylation450k/
   * Backup log
+   * xxx files are backed up. MD5 checksum are verified. From MDB.
 
 == Phenotype ==
+  * Files: <biobank>-phen-20140123.txt
+  * Location
+   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/Phenotypes/
+
+== Imputed Genotype ==
+  * Location
+   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/GWAS_ImputationGoNLv4/
+   * /pnfs/grid.sara.nl/data/bbmri.nl/backup/RP3/20140305/GWAS_ImputationGoNLv5/