= Phenotype data and metadata =
This file contains data on the core phenotypes, data on DNA/RNA samples and measurements (meta-data) and agreement that samples and data are made available to analyses within RP3.

== Format ==
 ||Biobank  || CODAM, LL, LLS, NTR, PAN, RS ||
 ||pheno_id  || ID linked to phenotypic data in line with sample_id list provided [[BR]] for data uploads (can be person_id if no special id for phenotype exists) ||
 ||Ascertainment_criterion  || Inclusion criterion biobank/selected samples ||
 ||GWAS_Chip  || comma separated in case of multiple chips ||
 ||GWAS_DataGeneration_Date  || YYYY ||
 ||DNA_BloodSampling_Age  || xx.x (i.e. years + 1 decimal) ||
 ||DNA_BloodSampling_Date  || YYYY-MM-DD ||
 ||DNA_BloodSampling_Time  || HH:MM ||
 ||DNA_Source  || Whole blood, other ||
 ||DNA_Extraction_Method  ||   ||
 ||DNA_Extraction_Date  || YYYY-MM-DD ||
 ||DNA_QuantificationMethod  ||   ||
 ||DNA_A260A280ratio  || A260/A280 ||
 ||RNA_BloodSampling_Age  || xx.x (i.e. years + 1 decimal) ||
 ||RNA_Sampling_Date  || YYYY-MM-DD ||
 ||RNA_Sampling_Time  || HH:MM ||
 ||RNA_Source  || Pax gene, other ||
 ||RNA_Extraction_Date  || YYYY-MM-DD ||
 ||RNA_Extraction_Method  ||   ||
 ||RNA_RIN  || RIN or equivalent score ||
 ||RNA_A260280ratio  || A260/A280 ||
 ||!BirthYear  || xxxx (e.g. 1969) ||
 ||Sex  || 0=male/1=female ||
 ||Smoking_Age  || xx.x (i.e. years + 1 decimal) ||
 ||Smoking  || 0=non-smoker/1=former smoker/2=current smoker ||
 ||Lipids_BloodSampling_Age  || xx.x (i.e. years + 1 decimal) ||
 ||Lipids_BloodSampling_Date  || DD/MM/YYYY ||
 ||Lipids_BloodSampling_Time  || HH:MM ||
 ||Lipids_BloodSampling_Fasting  || 0=no/1=yes ||
 ||!TotChol  || in mmol/L ||
 ||HDLchol  || in mmol/L ||
 ||Triglycerides  || in mmol/L ||
 ||LDLchol  || in mmol/L ||
 ||LDLcholMethod  || 1=Friedewald estimation/2=measured ||
 ||LipidsMed_Age  || xx.x (i.e. years + 1 decimal) ||
 ||!LipidMed  || 0=no/1=statins/2=yes, but no statins ||
 ||Anthropometry_Age  || xx.x (i.e. years + 1 decimal) ||
 ||Height  || xxx.x in cm ||
 ||Weight  || xx.x in kg ||
 ||CRP_BloodSampling_Age  || xx.x (i.e. years + 1 decimal) ||
 ||CRP_BloodSampling_Date  || YYYY-MM-DD ||
 ||CRP_BloodSampling_Time  || HH:MM ||
 ||hsCRP  || in mg/L ||
 ||CellCount_BloodSampling_Age  || xx.x (i.e. years + 1 decimal) ||
 ||CellCount_BloodSampling_Date  || YYYY-MM-DD ||
 ||CellCount_BloodSampling_Time  || HH:MM ||
 ||WBC  || WhiteBloodcellCount_WBC in x10^9cells/L ||
 ||RBC  || !RedBloodcellCount in x10^12cells/L ||
 ||HGB  || Hemoglobulin in mmol/L ||
 ||HCT  || Hematocrit L/L ||
 ||MCV  || !MeanCorpuscularVolume in fL ||
 ||MCH  || !MeanCorpuscularHemoglobin fmol ||
 ||MCHC  || !MeanCorpuscularHemoglobinConcentration in mmol/L ||
 ||CHCM  || !CorpuscularHemoglobinConcentrationMean in mmol/L ||
 ||CH  || !CorpuscularHemoglobinContent in fmol/L ||
 ||RDW  || !RedCellVolumeDistributionWidth in % ||
 ||HDW  || !HemoglobinConcentrationDistributionWidth in mmol/L ||
 ||PLT  || !PlateletCount in x10^9cells/L ||
 ||MPV  || !MeanPlateletVolume in fL ||
 ||Neut  || !NeutrophilCount in 10^9/L ||
 ||Lymph  || !LymphocyteCount in 10^9/L ||
 ||Mono  || !MonocyteCount in 10^9/L ||
 ||Eos  || !EosinophilCount in 10^9/L ||
 ||Baso  || !BasophilCount in 10^9/L ||
 ||LUC  || !LargeUnstainedCells in 10^9/L ||
 ||Neut_Perc  || in % of white bloodcell count ||
 ||Lymph_Perc  || in % of white bloodcell count ||
 ||Mono_Perc  || in % of white bloodcell count ||
 ||Eos_Perc  || in % of white bloodcell count ||
 ||Baso_Perc  || in % of white bloodcell count ||
 ||LUC_Perc  || in % of white bloodcell count ||
 
== Data ==

=== V02 ===
* Corrected smoking age of 0 for non smoking sample
* Added unique id <biobank>-<biobankSampleId>

attachment:RP3_pheno_V02.txt

=== V01 ===
The complete table with all phenotype data can be found here: attachment:RP3_pheno_V01.txt

Comparative plots have been generated and can be downloaded here: attachment:RP3_pheno_V01_plots.pdf

== File name ==
All phenotype data is stored at srm://srm.grid.sara.nl/pnfs/grid.sara.nl/data/bbmri.nl/RP3/<biobank>/Phenotypes:
{{{
<biobank>-phen-<YYYYMMDD>.txt
}}}