Changes between Version 3 and Version 4 of BIOS_RSC_production


Ignore:
Timestamp:
Nov 12, 2021 4:35:44 AM (3 years ago)
Author:
Leon Mei
Comment:

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  • BIOS_RSC_production

    v3 v4  
    22
    33= Use of SURFconnext =
    4 You can log into all service components described here with your own institutional account thanks to the support of SURFconnext except for the access to the actual workspace where you will be using a Time based password.
     4You can log into all websites described here with your own institutional account thanks to the support of SURFconnext except for the access to the actual workspace where you will be using a Time based password.
    55
    66= Procedure to obtain access to BBMRIomics workspace and datasets =
    7 Please follow the step-by-step manual below to start working on BBMRIomics datasets. A Code of Conduct document needs to be signed and you can contact [https://psychiatryamsterdam.nl/researcher/jansen-rick/ Rick Jansen] for this.
     7Please follow the step-by-step manual below to start working on BBMRIomics datasets. A Code of Conduct document needs to be signed and you can contact [https://psychiatryamsterdam.nl/researcher/jansen-rick/ Rick Jansen] for this. If you have any question, please contact Leon Mei at LUMC.
    88
    99= Step 1: Configuration of SBS BBMRIomics CO =
    … …  
    1212
    1313= Step 2: Configuration of Researchdrive =
    14 * You will get an invitation email to join Researchdrive. After that, try to log into https://researchdrive.surfsara.nl using your institutional credential. Choose "Login via SURFconnext". You may get an error message saying "Oops! Your SURF Research Drive account with email address <xxxx> and account <yyyyyy>-lumcnet@lumc.nl could not be found. It seems that you do not have permission to use SURF Research Drive. Please contact the IT department of your institution or data steward of your project to request access to SURF Research Drive.". In this case, please forward this message to Leon Mei to so that he can properly share the datasets.
     14* You will get an invitation email to join Researchdrive. After that, log into https://researchdrive.surfsara.nl using your institutional credential. Choose "Login via SURFconnext". You may get an error message saying "Oops! Your SURF Research Drive account with email address <xxxx> and account <yyyyyy>-lumcnet@lumc.nl could not be found. It seems that you do not have permission to use SURF Research Drive. Please contact the IT department of your institution or data steward of your project to request access to SURF Research Drive.". In this case, please forward this message to Leon Mei to so that he can properly share the datasets.
    1515* You should see a shared folder called "RSC_BIOS". There are two sub-directories: RP3_data and RP3_analysis. This folder is read-only and contains the prepared BBMRIomics data for downstream analysis.
    16  * If you don't see this shared folder, please contact Leon Mei.
    17 * You can also request the creation of a personal folder. This folder is your own personal storage place and you can write to (e.g., to create further directory structure). Please contact Leon Mei for this. Once it is created, you should see it directly under your Researchdrive. This folder is actually a writable short-cut to your personal folder under RSC_BIOS/Users. However you can't write to it via the path consisting RSC_BIOS/Users.
     16* You will also have a personal folder that is placed directly in the top level of your Researchdrive. This folder is your own personal storage place and you can write to (e.g., to create further directory structure). This folder is actually a writable short-cut to your personal folder under RSC_BIOS/Users. However you can't write to it via the path consisting RSC_BIOS/Users.
    1817* '''Please be aware that there is no backup support of your data stored at Researchdrive, so make sure you arrange proper backup of your scripts and data yourself.'''
    1918
    … …  
    2726* If you don't have budget, you can click "Request a new wallet" to apply for more resources. You can put "SRC-BBMRI" as Subtitle and "EINF-483" as Existing contract.
    2827* Go to "Profile" tab using the navigation bar at the top of the page.
    29  * Set up time based password in the "Profile" section by clicking the "more option" button. [https://researchclouddocs.readthedocs.io/en/latest/account_setup.html#totp more details].
     28 * Set up time based password in the "Profile" section by clicking the "more option" button. [https://servicedesk.surfsara.nl/wiki/display/WIKI/Log+in+to+your+workspace#Logintoyourworkspace-WorkspaceAccesswithTOTP more details].
    3029 * Link Researchdrive in the "Collaborative organisations" section by by clicking "more option" button. [https://servicedesk.surfsara.nl/wiki/display/WIKI/Connect+Research+Drive more details] 
    31 * Once your request to budget/new wallet get approved, you can request your user specific persistent storage and fixed IP address. This storage and IP resource can be used when you create a new workspace.
    32 * Additional documentations about RSC: https://researchclouddocs.readthedocs.io/en/latest/index.html
     30* Once your request to budget/new wallet gets approved, you can request your user specific persistent storage and fixed IP address. This persistent storage and IP resource can be used when you create a new workspace.
     31* Additional documentations about Research Cloud: https://servicedesk.surfsara.nl/wiki/display/WIKI/Research+Cloud+Documentation
    3332
    3433= Step 5: Launch or access a BBMRIomics workspace =