| | 10 | * First, please log into https://servicedesk.surfsara.nl/ and fill in the form of "Small Applications". |
| | 11 | * If you are a PhD student, the "Signing Authority" should be your supervisor's contact details. |
| | 12 | * "SURF contact" is Martin Brandt |
| | 13 | * "Resources" should be "HPC Cloud" |
| | 14 | * CPU and GPU core hours can be filled in based on your specific needs. Normally we only need CPU and you could put the maximum number of hours of "50000" in this application. |
| | 15 | * For storage, you can also request the maximum for SSD and Ceph and a reasonable amount for Research Drive. |
| 15 | | = Step 3: Configuration of Researchdrive = |
| 16 | | * You will get an invitation email to join Researchdrive. After that, log into https://researchdrive.surfsara.nl using your institutional credential. Choose "Login via SURFconnext". You may get an error message saying "Oops! Your SURF Research Drive account with email address <xxxx> and account <yyyyyy>-lumcnet@lumc.nl could not be found. It seems that you do not have permission to use SURF Research Drive. Please contact the IT department of your institution or data steward of your project to request access to SURF Research Drive.". In this case, please forward this message to Leon Mei to so that he can properly share the datasets. |
| 17 | | * You should see a shared folder called "RSC_BIOS". There are three sub-directories: "RP3_data", "RP3_analysis", and "Users". The first two folders are read-only and contains the prepared BBMRIomics data for downstream analysis. In "Users", you will find a personal folder with your name. This is your own personal storage place and you can write to (e.g., to create further directory structure). |
| 18 | | * '''Please be aware that there is no backup support of your data stored at Researchdrive, so make sure you arrange proper backup of your scripts and data yourself.''' |
| | 21 | = Step 3: Configuration of Research Drive (RD) = |
| | 22 | * You will get an invitation email to join Research Drive. After that, log into https://researchdrive.surfsara.nl using your institutional credential. Choose "Login via SURFconnext". You may get an error message saying "Oops! Your SURF Research Drive account with email address <xxxx> and account <yyyyyy>-lumcnet@lumc.nl could not be found. It seems that you do not have permission to use SURF Research Drive. Please contact the IT department of your institution or data steward of your project to request access to SURF Research Drive.". In this case, please forward this message to Leon Mei to so that he can properly share the datasets. |
| | 23 | * You should see a shared folder called "RSC_BIOS". There are two sub-directories "RP3_data" and "RP3_analysis" that contains the prepared BBMRIomics data for downstream analysis. They are read-only and you need to store the analysis results in your own personal space on RD. |
| | 24 | * '''Please be aware that there is no backup support of your data stored at Research Drive, so make sure you arrange proper backup of your scripts and data yourself.''' |
