Changes between Version 22 and Version 23 of BigCompute


Ignore:
Timestamp:
Dec 20, 2010 12:01:07 PM (14 years ago)
Author:
Barbera van Schaik
Comment:

update about workflow execution on grid

Legend:

Unmodified
Added
Removed
Modified

  • BigCompute

    v22 v23  
    5959* Available disk space on the grid storage elements / worker nodes
    6060
     61== Workflow execution ==
     62
     63''' On mini pilot. Split lines-per-file: 8,000,000. Start: 18-12-2010 16:40 '''
     64|| '''Lane''' || '''split BWA merge''' || '''Comments''' || '''Elapsed time (s)''' ||
     65|| A4a_L4_HUModqRBUDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-cOunUZ/html/workflow-cOunUZ.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100826_I176_FC804GCABXX_L6_HUModqRBUDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4a_HUModqRBUDIBAPE_L4/mergebam || 22740 ||
     66|| A4a_L6_HUModqRADDIAAPE  || [https://hangplek.nikhef.nl:443/workflows/workflow-pqWdc1/html/workflow-pqWdc1.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100826_I124_FC20813ABXX_L7_HUModqRADDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4a_HUModqRADDIAAPE_L6/mergebam || 37750 ||
     67|| A4a_L7_HUModqRBVDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-OqeNdv/html/workflow-OqeNdv.html failed] || || ||
     68|| A4b_L3_HUModqRAFDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-GRDX0X/html/workflow-GRDX0X.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100829_I168_FC804GBABXX_L1_HUModqRAFDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4b_HUModqRAFDIBAPE_L3/mergebam || 32256 ||
     69|| A4b_L6_HUModqRBTDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-ZRH98o/html/workflow-ZRH98o.html failed] || || ||
     70|| R2A _L1_HUModqRADDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-1lNDQh/html/workflow-1lNDQh.html failed] || || ||
     71|| R2A _L1_HUModqRAFDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-rufel6/html/workflow-rufel6.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100809_I125_FC2083DABXX_L1_HUModqRAFDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2A_HUModqRAFDIBAPE_L1/mergebam || 35819 ||
     72|| R2A _L5_HUModqRAEDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-wVuMjg/html/workflow-wVuMjg.html failed] || || ||
     73|| R2B _L3_HUModqRBTDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-L3m5Yi/html/workflow-L3m5Yi.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100809_I174_FC2085PABXX_L6_HUModqRBTDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2B_HUModqRBTDIAAPE_L3/mergebam || 23754 ||
     74|| R2B _L4_HUModqRBUDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-alGMJK/html/workflow-alGMJK.html failed] || pair 1 not in correct gzip format? || ||
     75|| R2B _L6_HUModqRBTDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-LCaDkY/html/workflow-LCaDkY.html failed] || || ||
     76|| R2C _L2_HUModqRBUDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-gVXW9i/html/workflow-gVXW9i.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100810_I171_FC20828ABXX_L3_HUModqRBUDIBAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2C_HUModqRBUDIBAPE_L2/mergebam || 40763 ||
     77|| R2C _L2_HUModqRBVDIBAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-8bma4j/html/workflow-8bma4j.html failed] || || ||
     78|| R2C _L7_HUModqRBVDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-Rjh1lC/html/workflow-Rjh1lC.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100810_I128_FC2087PABXX_L7_HUModqRBVDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/R2C_HUModqRBVDIAAPE_L7/mergebam || 39374 ||
     79|| Unknown_L6_HUModqRBUDIAAPE || [https://hangplek.nikhef.nl:443/workflows/workflow-IG0HAm/html/workflow-IG0HAm.html done] || lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/split_100804_I124_FC201RNABXX_L6_HUModqRBUDIAAPE_1/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/Unknown_HUModqRBUDIAAPE_L6/mergebam || 30307 ||
     80
     81''' BWA alignment on mini pilot without splitting the data '''
     82* 19-12-2010 14:00 [https://hangplek.nikhef.nl:443/workflows/workflow-rIUQ2N/html/workflow-rIUQ2N.html running]
     83
     84'''PicardQC on finished bam files'''
     85* 20-12-2010 11:30 [https://hangplek.nikhef.nl:443/workflows/workflow-3T5uMC/html/workflow-3T5uMC.html running]
     86
     87
    6188== Alternatives ==
    6289