Changes between Version 35 and Version 36 of BigCompute


Ignore:
Timestamp:
Dec 21, 2010 11:52:54 AM (14 years ago)
Author:
Barbera van Schaik
Comment:

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  • BigCompute

    v35 v36  
    3333* Bam2coverage creates a UCSC wiggle file to display the genome coverage (per 50kbp)
    3434* Coverage-per-base determines the coverage for every base in the genome and it summarizes the results (coverage versus frequency)
    35 * Annovar (currently working on the implementation). This is a pipeline to annotate variants (gene, dbsnp, hapmap, 1000g, conservation, etc)
     35* Annovar (works for hg18, working on other assemblies). This is a pipeline to annotate variants (gene, dbsnp, hapmap, 1000g, conservation, etc)
     36* FastqC
    3637
    3738'''Implemented components of the Groningen pipeline'''