Changes between Version 61 and Version 62 of BigCompute
- Timestamp:
- Mar 9, 2011 9:49:23 AM (14 years ago)
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BigCompute
v61 v62 63 63 === Data === 64 64 65 Browse to the following directory with the Vbrowser (this directory is only readable/writable for the gvnl group):66 lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/Results-test20101220 65 The data is located on the storage element at Sara and only readable and writable for the vlemed/gvnl group. This screencast demonstrates how to access the data from the Vbrowser: 66 http://www.youtube.com/watch?v=FicwWGAbubQ 67 67 68 Each component in the workflow generates a new sub directory. 68 Storage location (resource): srm.grid.sara.nl 69 69 70 If you would like to retrieve the analysis results of the picard-qc component of one of the samples, you go to the directory: 71 * bwa_databasename_parametername/samplename_libraryname_lanename/picard1.32qc/ 72 * Example: lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4a_HUModqRBVDIBAPE_L7 73 74 The results for the analysis where we have splitted the fastq-files is located in the directories that start with: 75 * split_fileprefix_1/ 76 77 '''Note that not everything is there yet and that the data structure may change, since we are still testing.''' 70 Path: /pnfs/grid.sara.nl/data/vlemed/gvnl 78 71 79 72 === Workflows and databases ===