Changes between Version 63 and Version 64 of BigCompute


Ignore:
Timestamp:
Mar 9, 2011 2:44:39 PM (14 years ago)
Author:
Barbera van Schaik
Comment:

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  • BigCompute

    v63 v64  
    3535* PicardQC (''partly done'') - pe04b-picardQC.ftl. Didn't get the R environment up and running yet, so the .pdf .hist and .bamindexstats can not be produced yet. Will continue with the other components and fix this later. Attachment contains info about the required R packages.
    3636* !GatkGenerateIntervalFile (''done'') - see e-mail Freerk on Dec 13, 2010
    37 * !ReAlign (''in progress'') - pe06-realign.ftl. Fails, need to discuss this with Freerk
     37* !ReAlign (''done'') - pe06-realign.ftl. Works with test dataset, now (9-3-2011) testing with real data
    3838* !FixMates (''done'') - pe07-fixmates.ftl
    3939* !GatkCovariates (''done'') - pe08-covariates-before.ftl, pe11-covariates-after.ftl
    … …  
    4141* !SortSam (''done'') - pe10-sam-sort.ftl
    4242* !AnalyzeCovariates (''done'') - pe12-analyze-covariates.ftl
    43 * ''Update 31-1-2011'': integrating all the components in two workflows; one for alignment, one for the subsequent steps
    4443
    4544'''To be implemented'''