| Version 1 (modified by , 14 years ago) (diff) |
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Table of Contents
Coverage Analysis Pipeline
TODO. Suggested parties to take this up: Antoine van Kampen, Barbara van Schaik, AMC
Attachments (7)
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CreateGridDirectory.png (2.9 KB) - added by 14 years ago.
WF CreateGridDirectory?
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bwaIndexDatabase.png (44.7 KB) - added by 14 years ago.
WF Create BWA index on database
- splitFastq.png (31.0 KB) - added by 14 years ago.
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BWAparam.png (39.1 KB) - added by 14 years ago.
WF Alignment with BWA
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MergeIndexSNPcall.png (36.1 KB) - added by 14 years ago.
WF Merge bam files and call SNPs with samtools
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Coverage_Varscan_BaseCoverage.png (8.8 KB) - added by 14 years ago.
WF call SNPs with varscan, calculate coverage per 50kb and per base
- CoveragePerBase.png (4.3 KB) - added by 14 years ago.
Download all attachments as: .zip
