Status: Alpha Authors: Patrick Deelen, Morris Swertz

Tool to compare sequence data with data from genotyping chips.

= Features =
 * Overview of concordance per sample
 * Matrix of all sequence samples vs all genotype samples
   * This is used to detected sample mix-ups
 * Performance per SNP

= Input =
The genotype data input is currently PED/MAP as generated by [http://pngu.mgh.harvard.edu/~purcell/plink/ plink].

Both QCed as non QCed data is supported. The following sequence file formates are supported

 * VCF
 * Q20
 * CNS

= Future =
 * Plots to give more insight in SNP performance