UMCG SFTP (application20.target.rug.nl)

raw_data

Contains all the data coming from BGI, including their variant calls.

• /fastq

A4 trio fasta files */hg18 Pilot snp, cnv, indel, stat files sent by BGI at the beginning of 2011

• /hg19

A4 trio bam, snp, cnv files sent by BGI in April 2011

resources

• GoNL resources tarball (Thanks Freerk!)

results

Here is all the data that has gone through any kind processing at UMCG */bam/umcg/ A4 trio complete bam files pilot chromosomes 19, 20, X, Y, MT bam files

• /snp/hg18

Pilot cleaned up VCF files from the BGI on hg18(sorted, updated to VCF4.0)

• /snp/hg19

Pilot initial unfiltered calls from UMCG Lifted-over files from BGI