Changes between Version 9 and Version 10 of ImputationPipeline

Timestamp:

Nov 23, 2010 10:52:35 AM (15 years ago)

Author:

a.kanterakis

Comment:

--

ImputationPipeline

@@ -123 +123 @@
 
 ==== Parameters ====
+ * Path to plink executable (example: /Users/alexandroskanterakis/Tools/plink/plink-1.07-mac-intel/plink)
+ * Path to BED, BIM, FAM file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05)
+ * Filename of exported PED file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.ped)
+ * Filename of exported MAP file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.map)
 
- * Path to plink executable (example: /Users/alexandroskanterakis/Tools/plink/plink-1.07-mac-intel/plink) 
- * Path to BED, BIM, FAM file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05) 
- * Filename of exported PED file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.ped) 
- * Filename of exported MAP file (example: /Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.map) 
+==== Example of usage: ====
+
+{{{
+#!div style="font-size: 80%"
+Code highlighting:
+  {{{#!python
+ConvertBedBimFamToPedMap(
+
+    plink_path="/Users/alexandroskanterakis/Tools/plink/plink-1.07-mac-intel/plink",
+    bbf_path="/Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05",  
+    ped_path="/Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.ped", 
+    map_path="/Users/alexandroskanterakis/Data/Finnish_cohort/CD_Finnuncorr.maf05.map")
+  }}}
+}}}
+
 == BEABLE pipeline ==