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This page describes the Imputation pipelines developed by the GoNL - Impute team. Please contribute. For help with trac wiki formatting: http://trac.edgewall.org/wiki/WikiFormatting
All scripts presented here are located in our SVN repository: http://www.bbmriwiki.nl/svn/imputation
Minutes of our Team Calls: http://www.bbmriwiki.nl/wiki/Imputations/Minutes
Contributors and Teams
- UMC Groningen: Alexandros Kanterakis alexandros.kanterakis@…
Study data
Reference data
Pre processing
Quality metrics
Complete pipelines
Results
References
See also
- An older version of the imputation pipeline developed mainly by Harm-Jan and Lude Franke: ImputationPipeline_old it uses the ImputationTool for study / reference normalization.
- SVN repository: http://www.bbmriwiki.nl/svn/imputation
- http://gettinggeneticsdone.blogspot.com/2010/04/probabel-r-package-for-gwas-data.html ProbABEL - R package for GWAS data imputation. http://www.biomedcentral.com/1471-2105/11/134 http://mga.bionet.nsc.ru/~yurii/ABEL/GenABEL/ an R library for Genome-wide association analysis.
- Impute2: http://mathgen.stats.ox.ac.uk/impute/impute_v2.html
