Changes between Version 2 and Version 3 of Notes


Ignore:
Timestamp:
Oct 27, 2010 3:02:19 PM (12 years ago)
Author:
freerkvandijk
Comment:

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  • Notes

    v2 v3  
    77* Leiden has shark cluster, 108 cpu's
    88* If all trios put together for SNP calling etc. have a look for repeated error patterns in Illumina machines
     9* Have a look at indel positions after calling, is position correct?
    910
    1011= Action points =
     
    1516= Questions =
    1617* Is QC recalibration also needed for other platforms?
     18
     19
     20
     21
     22= Pipeline Utrecht =
     23* Raw data
     24- Split by barcodes/samples
     25- Chunking and coversion to fastq
     26- Fastq sent to nodes
     27- Nodes return sorted .BAMs and statistics
     28- Main node merges all data from other nodes
     29- Custom pileup script merges (Frans-Paul)
     30
     31- Ask Frans for info