Changes between Version 3 and Version 4 of PipelineCommands


Ignore:
Timestamp:
Jan 25, 2011 10:08:36 AM (14 years ago)
Author:
laurent
Comment:

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  • PipelineCommands

    v3 v4  
    3939This Step is currently updated as:
    4040
    41  * [http://www.bbmriwiki.nl/search/opensearch?q=wiki%3ACalculateHsMetrics Picard CalculateHsMetrics] should be replaced by GATK DepthOfCoverage
     41 * Picard !CalculateHsMetrics should be replaced by GATK !DepthOfCoverage
    4242 * !MeanQualityByCycle and !QualityScoreDistribution should be moved after the recalibration step
    4343