Changes between Version 3 and Version 4 of SchematicOverview


Ignore:
Timestamp:
Sep 25, 2010 6:59:04 AM (12 years ago)
Author:
Morris Swertz
Comment:

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  • SchematicOverview

    v3 v4  
    1010#!graphviz
    1111digraph G {
    12 BGI->FASTQ->"SNP and indel calling"->VCF
    13 FASTQ->"de novo variant discovery and verification"
    14 BGI->VCF->"Chip QC"->"Qced Genotypes"
    15 ImmunoChip->"Chip QC"
    16 VCF->"Mendelian QC"->"Qced Genotypes"
    17 "Qced Genotypes"->"Call improvement and phasing"->"Improved and phased genotypes"->Imputations
    18 "Improved and phased genotypes"->"Population genetics"
    19 "Improved and phased genotypes"->"Functional variants"
    20 "Improved and phased genotypes"->"Novel variant discovery and verification"
    21 FASTQ->"Novel variant discovery and verification"
     12ranksep=.75; size = "10,7.5";
     13
     14node[shape=folder]
     15"Biobanks"
     16"Sequence Reads (FASTQ)"
     17"Qced Genotypes (VCF)"
     18"Coverage report"
     19"Improved and phased genotypes"
     20"GWAS control cohorts"
     21"Imputed GWAS control cohorts"
     22"Dutch HapMap"
     23
     24node[shape=diamond, style=filled, fillcolor=yellow]
     25
     26Biobanks->BGI->"Sequence Reads (FASTQ)"->"Alignment"->"SNP and indel calling"->"Chip QC"->"Mendelian QC"->"Qced Genotypes (VCF)"
     27"Alignment"->"Coverage analysis"->"Coverage report"
     28BGI->"Chip QC"
     29Biobanks->ImmunoChip->"Chip QC"
     30"Qced Genotypes (VCF)"->"Call improvement and phasing"->"Improved and phased genotypes"->Imputations
     31Biobanks->"GWAS control cohorts"->Imputations->"Imputed GWAS control cohorts"
     32"Improved and phased genotypes"->"Population genetics"->"Dutch HapMap"
     33"Improved and phased genotypes"->"Functional variants"->"Dutch HapMap"
     34"Improved and phased genotypes"->"Novel variant discovery and verification"->"Dutch HapMap"
     35"Sequence Reads (FASTQ)"->"Novel variant discovery and verification"
     36"Qced Genotypes (VCF)"->TrioAwarePhasing -> "Improved and phased genotypes"
     37
    2238}
    2339}}}