Changes between Version 1 and Version 2 of SnpCallingPipeline/AlignmentAndCleaning


Ignore:
Timestamp:
Oct 19, 2010 1:06:21 AM (14 years ago)
Author:
Morris Swertz
Comment:

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  • SnpCallingPipeline/AlignmentAndCleaning

    v1 v2  
    2828* lane.chr.covariate_table.csv - table of countcovariates output for recalibration
    2929* lane.chr.recal.bam - alignment map with recalibrated quality scores
    30 
    3130== align ==
    3231Align each end of paired end.
    … …  
    3635||output: ||lane.chr.1.sai, lane.chr.2.sai ||
    3736||docs:   ||http://bio-bwa.sourceforge.net/bwa.shtml ||
     37||command:||ngs_pipelines/templates/ngs/template-paired-end_step_0_1.ftl ||
    3838
    3939== align-pe ==