Changes between Version 6 and Version 7 of SnpCallingPipeline/AlignmentAndCleaning


Ignore:
Timestamp:
Oct 19, 2010 7:34:30 PM (14 years ago)
Author:
Morris Swertz
Comment:

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  • SnpCallingPipeline/AlignmentAndCleaning

    v6 v7  
    2828* lane.chr.covariate_table.csv - table of countcovariates output for recalibration
    2929* lane.chr.recal.bam - alignment map with recalibrated quality scores
    30 == bwa-align ==
     30== bwa-align=pe ==
    3131Align each end of paired end.
    3232 
    33 ||tool:   ||bwa-align ||
     33||tool:   ||bwa align ||
    3434||input:  ||chr.fasta, lane.1.fq.gz, lane.2.fq.gz ||
    3535||output: ||lane.chr.1.sai, lane.chr.2.sai ||