Changes between Version 23 and Version 24 of SnpCallingPipeline


Ignore:
Timestamp:
Oct 16, 2010 6:06:09 PM (12 years ago)
Author:
Morris Swertz
Comment:

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  • SnpCallingPipeline

    v23 v24  
    2525                "reference.fasta"->Split->"chr[1-24].fasta"
    2626                dbsnp -> RealignerTargetCreator
    27                 label = "Per genome";
     27                label = "Per genome (1)";
    2828        }
    2929
     
    3838                "flowcell_lane.2.fq.gz" -> align2 -> alignPE -> MarkDuplicates -> RealignIndelsAndFixMates -> "flowcell_lane.aligned.bam"
    3939                "realign.intervals" -> RealignIndelsAndFixMates   
    40                 label = "Per lane/Per chromosome";
     40                label = "Per Sample,Lane,Chromosome (750*3*24) ";
    4141        }
    4242
     
    5050                RealignIndelsAndFixMates2 -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"
    5151Filtration -> VCF
    52                 label = "Per Sample/Per Chromosome";
     52                label = "Per Sample,Chromosome (750*24)";
    5353        }
    5454