Changes between Version 24 and Version 25 of SnpCallingPipeline
- Timestamp:
- Oct 16, 2010 6:07:56 PM (14 years ago)
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SnpCallingPipeline
v24 v25 38 38 "flowcell_lane.2.fq.gz" -> align2 -> alignPE -> MarkDuplicates -> RealignIndelsAndFixMates -> "flowcell_lane.aligned.bam" 39 39 "realign.intervals" -> RealignIndelsAndFixMates 40 label = "Per Sample,Lane,Chromosome (750*3*24) ";40 label = "Per Lane*Chromosome (750*3*24) "; 41 41 } 42 42 … … 50 50 RealignIndelsAndFixMates2 -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports" 51 51 Filtration -> VCF 52 label = "Per Sample ,Chromosome (750*24)";52 label = "Per Sample*Chromosome (750*24)"; 53 53 } 54 54