Changes between Version 25 and Version 26 of SnpCallingPipeline


Ignore:
Timestamp:
Oct 16, 2010 6:14:27 PM (14 years ago)
Author:
Morris Swertz
Comment:

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Legend:

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  • SnpCallingPipeline

    v25 v26  
    3838                "flowcell_lane.2.fq.gz" -> align2 -> alignPE -> MarkDuplicates -> RealignIndelsAndFixMates -> "flowcell_lane.aligned.bam"
    3939                "realign.intervals" -> RealignIndelsAndFixMates   
    40                 label = "Per Lane*Chromosome (750*3*24) ";
     40                label = "Per Lane*Chromosome (750*3*24=54k) ";
    4141        }
    4242
     
    4545                color=lightgrey;
    4646                node [style=filled,color=white];
    47                 "flowcell_lane.aligned.bam" -> Merge -> "sample.aligned.bam" -> RealignIndelsAndFixMates2
     47                "flowcell_lane.aligned.bam" -> Merge -> "sample.aligned.bam" -> "IndelRealigner & FixMateInformation"
    4848                "flowcell_lane2.aligned.bam" -> Merge
    4949                "flowcell_lane3.aligned.bam" -> Merge
    50                 RealignIndelsAndFixMates2 -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"
     50                "IndelRealigner & FixMateInformation" -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"
    5151Filtration -> VCF
    52                 label = "Per Sample*Chromosome (750*24)";
     52                label = "Per Sample*Chromosome (750*24=18k)";
    5353        }
    5454