Changes between Version 26 and Version 27 of SnpCallingPipeline


Ignore:
Timestamp:
Oct 16, 2010 6:16:33 PM (12 years ago)
Author:
Morris Swertz
Comment:

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  • SnpCallingPipeline

    v26 v27  
    3636                "chr[1-24].fasta" -> align2
    3737                "chr[1-24].fasta" -> alignPE
    38                 "flowcell_lane.2.fq.gz" -> align2 -> alignPE -> MarkDuplicates -> RealignIndelsAndFixMates -> "flowcell_lane.aligned.bam"
    39                 "realign.intervals" -> RealignIndelsAndFixMates   
     38                "flowcell_lane.2.fq.gz" -> align2 -> alignPE -> MarkDuplicates -> "IndelRealigner (knownsOnly) & FixMateInformation" -> "flowcell_lane.aligned.bam"
     39                "realign.intervals" -> "IndelRealigner (knownsOnly) & FixMateInformation"   
    4040                label = "Per Lane*Chromosome (750*3*24=54k) ";
    4141        }