Changes between Version 31 and Version 32 of SnpCallingPipeline


Ignore:
Timestamp:
Oct 16, 2010 6:24:17 PM (12 years ago)
Author:
Morris Swertz
Comment:

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  • SnpCallingPipeline

    v31 v32  
    1010== Simplified Overview ==
    1111
    12 This simplified overview hides intermediate sort and indexing steps.
     12This simplified overview this schema hides intermediate sort and indexing steps and only shows data inputs/outputs first time they occur.
    1313
    1414{{{#!graphviz
     
    4545                color=lightgrey;
    4646                node [style=filled,color=white];
    47                 "flowcell_lane.aligned.bam" -> Merge -> "sample.aligned.bam" -> "IndelRealigner"-> FixMateInformation
    48                 "flowcell_lane2.aligned.bam" -> Merge
     47                "flowcell_lane.aligned.bam" -> Merge -> "IndelRealigner"-> FixMateInformation
     48                "flowcell_lane2.aligned.bam" -> Merge -> "sample.aligned.bam"
    4949                "flowcell_lane3.aligned.bam" -> Merge
    5050                FixMateInformation -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"