Changes between Version 32 and Version 33 of SnpCallingPipeline

Timestamp:

Oct 16, 2010 6:33:27 PM (14 years ago)

Author:

Morris Swertz

Comment:

--

SnpCallingPipeline

@@ -15 +15 @@
 
 digraph g {
-  size="10,10"
+        size="10,10"
+        node [shape=box,style=filled,color=white]
+        "dbsnp"
+        "reference.fasta"
+        "realign.intervals"
+        "indelcalls.vcf"
+        "chr[1-24].fasta"
+        "flowcell_lane.1fq.gz"
+        "flowcell_lane.2fq.gz"
+
+        node [shape=ellipse,color=yellow]
 
         subgraph cluster_0 {
                 style=filled;
                 color=lightgrey;
-                node [style=filled,color=white];
                 "reference.fasta" -> RealignerTargetCreator -> "realign.intervals"
                 "indelcalls.vcf"-> RealignerTargetCreator 
@@ -45 +54 @@
                 color=lightgrey;
                 node [style=filled,color=white];
-                "flowcell_lane.aligned.bam" -> Merge -> "IndelRealigner"-> FixMateInformation
-                "flowcell_lane2.aligned.bam" -> Merge -> "sample.aligned.bam"
+                "flowcell_lane.aligned.bam" -> Merge -> "sample.aligned.bam" -> "IndelRealigner"-> FixMateInformation
+                "flowcell_lane2.aligned.bam" -> Merge
                 "flowcell_lane3.aligned.bam" -> Merge
                 FixMateInformation -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"
@@ -52 +61 @@
                 label = "Per Sample*Chromosome (750*24=18k)";
         }
-
-
-
-
 }