Changes between Version 32 and Version 33 of SnpCallingPipeline


Ignore:
Timestamp:
Oct 16, 2010 6:33:27 PM (12 years ago)
Author:
Morris Swertz
Comment:

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  • SnpCallingPipeline

    v32 v33  
    1515
    1616digraph g {
    17   size="10,10"
     17        size="10,10"
     18        node [shape=box,style=filled,color=white]
     19        "dbsnp"
     20        "reference.fasta"
     21        "realign.intervals"
     22        "indelcalls.vcf"
     23        "chr[1-24].fasta"
     24        "flowcell_lane.1fq.gz"
     25        "flowcell_lane.2fq.gz"
     26
     27        node [shape=ellipse,color=yellow]
    1828
    1929        subgraph cluster_0 {
    2030                style=filled;
    2131                color=lightgrey;
    22                 node [style=filled,color=white];
    2332                "reference.fasta" -> RealignerTargetCreator -> "realign.intervals"
    2433                "indelcalls.vcf"-> RealignerTargetCreator
     
    4554                color=lightgrey;
    4655                node [style=filled,color=white];
    47                 "flowcell_lane.aligned.bam" -> Merge -> "IndelRealigner"-> FixMateInformation
    48                 "flowcell_lane2.aligned.bam" -> Merge -> "sample.aligned.bam"
     56                "flowcell_lane.aligned.bam" -> Merge -> "sample.aligned.bam" -> "IndelRealigner"-> FixMateInformation
     57                "flowcell_lane2.aligned.bam" -> Merge
    4958                "flowcell_lane3.aligned.bam" -> Merge
    5059                FixMateInformation -> IndelGenotyperV2 -> FilterSingleCalls -> UnifiedGenotyper -> Filtration -> VariantEval -> "QC reports"
     
    5261                label = "Per Sample*Chromosome (750*24=18k)";
    5362        }
    54 
    55 
    56 
    57 
    5863}
    5964