Changes between Version 33 and Version 34 of SnpCallingPipeline

Timestamp:

Oct 16, 2010 6:36:47 PM (14 years ago)

Author:

Morris Swertz

Comment:

--

SnpCallingPipeline

@@ -22 +22 @@
         "indelcalls.vcf"
         "chr[1-24].fasta"
-        "flowcell_lane.1fq.gz"
-        "flowcell_lane.2fq.gz"
+        "flowcell_lane.1.fq.gz"
+        "flowcell_lane.2.fq.gz"
+        "flowcell_lane.aligned.bam"
+        "flowcell_lane2.aligned.bam"
+        "flowcell_lane3.aligned.bam"
+        "sample.aligned.bam"
+        "QC reports"
+        "VCF"
 
         node [shape=ellipse,color=yellow]
@@ -40 +46 @@
                 style=filled;
                 color=lightgrey;
-                node [style=filled,color=white];
-                "flowcell_lane.1fq.gz" -> align1 -> alignPE
+                "flowcell_lane.1.fq.gz" -> align1 -> alignPE
                 "chr[1-24].fasta" -> align1
                 "chr[1-24].fasta" -> align2
@@ -53 +58 @@
                 style=filled;
                 color=lightgrey;
-                node [style=filled,color=white];
                 "flowcell_lane.aligned.bam" -> Merge -> "sample.aligned.bam" -> "IndelRealigner"-> FixMateInformation
                 "flowcell_lane2.aligned.bam" -> Merge