Changes between Version 4 and Version 5 of SnpCallingPipeline


Ignore:
Timestamp:
Sep 12, 2010 11:52:07 PM (14 years ago)
Author:
Morris Swertz
Comment:

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  • SnpCallingPipeline

    v4 v5  
    236236
    237237http://seqanswers.com/forums/index.php
    238 
    239238= Appendix A – Schematic overview of the pipeline =
    240239
    241 ''Figure 1. Overview of the analysis pipeline created using the GATK. The steps/processes are all numbered. More information on these steps can be found in the corresponding text sessions.''
    242 
    243 ''Figure 2. Overview of the analysis pipeline created using the GATK. This part starts at step 7 from figure 1. The steps/processes are all numbered. More information on these steps can be found in the corresponding text sessions.''
    244 
     240== Figure 1. Overview of the analysis pipeline created using the GATK. ==
     241The steps/processes are all numbered. More information on these steps can be found in the corresponding text sessions.''
     242
     243[[Image(wiki:SnpCalingPipeline:Figure1.png)]]
     244
     245== Figure 2. Overview of the analysis pipeline created using the GATK. ==
     246
     247This part starts at step 7 from figure 1. The steps/processes are all numbered. More information on these steps can be found in the corresponding text sessions.''
     248
     249[[Image(wiki:SnpCalingPipeline:Figure2.png)]]
     250
     251== Figure 3. Overview of the PICARD pipeline. ==
     252
     253This tool performs several quality checks after the alignment step completed.''
     254
     255[[Image(wiki:SnpCalingPipeline:Figure3.png)]]
    245256''Figure 3. Overview of the PICARD pipeline. This tool performs several quality checks after the alignment step completed.''