Changes between Version 12 and Version 13 of Test imputation pipeline

Timestamp:

Feb 17, 2012 1:54:27 PM (13 years ago)

Author:

a.kanterakis

Comment:

--

Test imputation pipeline

@@ -17 +17 @@
 
 === Study panel ===
-The study panel is an artificial genotype dataset. The dataset contains the SNPs set of the Illumina Hap550 platform. To generate it we followed the following steps:
+The study panel is an artificial genotype dataset. It consists of 5000 samples in the SNP set of the Illumina Hap550 platform. To generate it we followed the following steps:
  * Download the genetic map of b37 release of human genome from impute2: http://mathgen.stats.ox.ac.uk/impute/impute_v2.html#download_reference_data
  * Download and install hapgen2: https://mathgen.stats.ox.ac.uk/genetics_software/hapgen/hapgen2.html
@@ -41 +41 @@
 SNPs not in 1000Genomes but in Hap550: 935
 }}}
+
+== "Amsterdam" Run ==
+
+== "Groningen" Run ==
+ * The first step is to upload the data in the grid.
+ * Use Molgenis - compute to generate the scripts (jdl and sh files)
+}}}