Changes between Version 2 and Version 3 of Test imputation pipeline


Ignore:
Timestamp:
Feb 17, 2012 12:55:01 PM (13 years ago)
Author:
a.kanterakis
Comment:

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  • Test imputation pipeline

    v2 v3  
    55The reference dataset has been created from the raw VCF data of 1000 Genomes data.
    66 * Download VCF files from : ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20110521
    7  * Export only the SNPs (filter out the indels and SVs) from VCF data
     7 * Export only the SNPs (filter out the indels and SVs) from VCF data by using [http://vcftools.sourceforge.net/ vcftools]
    88
    99The study panel is an artificial genotype dataset. Created by
    1010The study panel is an artificial genotype dataset. Created by
     11The study panel is an artificial genotype dataset. Created by