Changes between Version 7 and Version 8 of Test imputation pipeline


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Timestamp:
Feb 17, 2012 1:18:47 PM (13 years ago)
Author:
a.kanterakis
Comment:

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  • Test imputation pipeline

    v7 v8  
    2424   * From the Table combo box select: snpArrayIllumina550
    2525   * Click the "get output" button
     26 * For the hapgen2 to run we need to specify at least one causal SNP. We selected the first SNP of the dataset :
     27{{{
     28hapgen2 \
     29-h ALL.chr6.merged_beagle_mach.20101123.snps_indels_svs.genotypes.exported.impute.hap \
     30-l ALL.chr6.merged_beagle_mach.20101123.snps_indels_svs.genotypes.exported.impute.legend \
     31-m genetic_map_chr6_combined_b37.txt \
     32-o chr6 \
     33-dl 16539175 1 1.0 1.0 \
     34-n 5000 0
     35}}}
    2636The study panel is an artificial genotype dataset. Created by
    2737The study panel is an artificial genotype dataset. Created by
     38The study panel is an artificial genotype dataset. Created by