Changes between Version 26 and Version 27 of WikiStart

Timestamp:

Sep 15, 2010 4:39:00 PM (14 years ago)

Author:

Morris Swertz

Comment:

--

WikiStart

@@ -1 +1 @@
 [[BlogList(recent=5, max_size=250, format=float, heading=New blogs)]]
-
 = Welcome to the BBMRI/GvNL Wiki =
 
@@ -9 +8 @@
  * See WorkPlan - description of the current planning
  * See ReadingMaterials - for recommended powerpoints and papers
- * Projects and pipelines:
-   * SchematicOverview - overview on how the pipelines work together
+
+= Projects and pipelines =
+Work organization based on regenboog project. Clearly there is much connection between all work. See SchematicOverview.
+
+== WP 1 Next generation sequencing ==
    * SnpCallingPipeline - description of the variation analysis pipeline (UMCG?)
    * CoverageAnalysisPipeline - description of the coverage analysis pipeline (AMC?)
@@ -16 +18 @@
    * MendelianQcPipeline - description of the mendelian check pipeline
    * DeNovoVariationPipeline - finding de novo variations in the GvNL data (LUMC?)
-   * TrioAwarePhasingPipeline - phasing the individuals using trio information
-   * TrioAwareVariantDiscoveryPipeline - Trio-aware variant discovery and genotype calling pipeline
+   * TrioAwareVariantDiscoveryPipeline - Trio-aware variant discovery and genotype calling pipelin
+
+== WP2 GWAS pipeline and downstream analysis ==
+   * TrioAwarePhasingPipeline - phasing the individuals using trio informatione
    * ImputationPipeline - description of the imputation pipeline (VU?,UMCG?)
+
+== WP3 Catalogue of biobanks ==
+   * Hackaton - hackaton in collaboration with NBIC
+
+== WP4 Infrastructure ==
+   * DataManagement - how we use MOLGENIS to track/trace data and tools
+   * WorkflowTools - how to configure, manage and run pipelines
+   * BigStorage - how we store the NGS and GWAS data
+   * BigCompute - how we will enable the pipelines on grids and clusters
 = Using this wiki =
 As all Wiki pages, this page is editable, this means that you can