Welcome to the BBMRI/GvNL Wiki

This is the wiki for the BBMRI-NL bioinformatics and GvNL analysis working groups.

• See MeetingMinutes - minutes of our Skype meetings
• See ProjectOverview - description of the bioinformatics regenboog
• See DataAnalysisPlan - description of the GvNL analysis objectives
• See WorkPlan - description of the current planning
• See ReadingMaterials - for recommended powerpoints and papers
• Projects and pipelines:
  • SchematicOverview - overview on how the pipelines work together
  • SnpCallingPipeline - description of the variation analysis pipeline (UMCG?)
  • CoverageAnalysisPipeline - description of the coverage analysis pipeline (AMC?)
  • ChipBasedQcPipeline - description of the chip data comparison QC pipeline (EMC?)
  • MendelianQcPipeline - description of the mendelian check pipeline
  • DeNovoVariationPipeline - finding de novo variations in the GvNL data (LUMC?)
  • TrioAwareVariantDiscoveryPipeline? - Trio-aware variant discovery and genotype calling pipeline
  • ImputationPipeline - description of the imputation pipeline (VU?,UMCG?)

Using this wiki

As all Wiki pages, this page is editable, this means that you can modify the contents of this page simply by using your web-browser. Simply click on the "Edit this page" link at the bottom of the page. WikiFormatting will give you a detailed description of available Wiki formatting commands.

On top there is menu with additional features

• Blog - Meetings, events etc can be blogged
• Roadmap - Overview of the main objectives
• Tickets - All our TODO's (per roadmap) we can collect under Tickets
• Browse source - All our scripts we can browsed under Browse Source
• Subversion - Programmers can commit their code using SVN at ​http://gbic.target.rug.nl/bbmri/svn