| Version 3 (modified by , 10 years ago) (diff) |
|---|
Date: 06-november-2013
Analysis by: Peter-Bram 't Hoen
The combined gene counts for the 2330 samples from run 1 are available on the VM: /virdir/Backup/run_1_gene_counts/combined_gene_count_run_1.txt and were generated using this script: R script for merging gene count tables
Subsequently, pairwise Spearman correlations were calculated. From these the median Spearman correlation for each sample to each other sample was calculated. This is also called the D-statistic. The D-statistics (ranked from low to high) can be found in this file Median Spearman correlations
Attachments (7)
- merge_count_script.r (756 bytes) - added by 10 years ago.
- Median_pairwise_spearman_correlations_complete_gene_data_run_1.txt (54.0 KB) - added by 10 years ago.
- Median_pairwise_spearman_correlations_by_flowcell_complete_gene_data_run_1.pdf (22.9 KB) - added by 10 years ago.
- mdsplot_filt_colored_biobank.pdf (21.1 KB) - added by 10 years ago.
- Dstat_biobank_boxplot.pdf (5.6 KB) - added by 10 years ago.
- VM_QC_correlations_only_expressed_genes.R (1.7 KB) - added by 10 years ago.
- mdsplot_filt_colored_gc.pdf (24.1 KB) - added by 10 years ago.
Download all attachments as: .zip
