= Gene, exon and transcript counts =

Date: 06-november-2013[[BR]]
Analysis by: Peter-Bram 't Hoen[[BR]]

The combined gene counts for the 2330 samples from run 1 are available on the VM: /virdir/Backup/run_1_gene_counts/combined_gene_count_run_1.txt and were generated using this script: [raw-attachment:merge_count_script.r R script for merging gene count tables][[BR]]
Subsequently, pairwise Spearman correlations were calculated: /virdir/Backup/run_1_gene_counts/Spearman_correlations_complete_gene_data_run_1.txt[[BR]]
From these the median Spearman correlation for each sample to each other sample was calculated. This is also called the D-statistic. The D-statistics (ranked from low to high) can be found in this file [raw-attachment:Median_pairwise_spearman_correlations_complete_gene_data_run_1.txt Median Spearman correlations][[BR]]