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Timeline

Oct 20, 2010:

8:09 PM SnpCallingPipeline edited by Morris Swertz: (diff)

Oct 19, 2010:

8:15 PM SnpCallingPipeline/AlignmentAndCleaning edited by Morris Swertz: (diff)
7:34 PM SnpCallingPipeline/AlignmentAndCleaning edited by Morris Swertz: (diff)
7:34 PM SnpCallingPipeline/AlignmentAndCleaning edited by Morris Swertz: (diff)
2:59 AM SnpCallingPipeline/AlignmentAndCleaning edited by Morris Swertz: (diff)
1:08 AM SnpCallingPipeline/AlignmentAndCleaning edited by Morris Swertz: (diff)
1:08 AM SnpCallingPipeline/AlignmentAndCleaning edited by Morris Swertz: (diff)
1:06 AM SnpCallingPipeline/AlignmentAndCleaning edited by Morris Swertz: (diff)
1:06 AM SnpCallingPipeline/AlignmentAndCleaning edited by Morris Swertz: (diff)
12:49 AM SnpCallingPipeline edited by Morris Swertz: (diff)

Oct 18, 2010:

4:51 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:49 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:48 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:47 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:47 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:46 AM SnpCallingPipeline/ReferencePreparation created by Morris Swertz
4:45 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:44 AM SnpCallingPipeline/AlignmentAndCleaning created by Morris Swertz
4:43 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:42 AM SnpCallingPipeline/VariantCalling created by Morris Swertz
4:41 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:38 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:37 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:37 AM SnpCallingPipeline edited by Morris Swertz: (diff)
4:36 AM SnpCallingPipeline edited by Morris Swertz: (diff)

Oct 17, 2010:

2:06 PM SnpCallingPipeline edited by Morris Swertz: (diff)
2:04 PM Blog: First raw reads in; Freerk and Morris go to Boston to get GATK running edited by Morris Swertz

Oct 16, 2010:

6:41 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:36 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:33 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:24 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:21 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:20 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:18 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:17 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:16 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:14 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:07 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:06 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:02 PM SnpCallingPipeline edited by Morris Swertz: (diff)
6:01 PM SnpCallingPipeline edited by Morris Swertz: (diff)
5:59 PM SnpCallingPipeline edited by Morris Swertz: (diff)
5:53 PM SnpCallingPipeline edited by Morris Swertz: (diff)
5:50 PM SnpCallingPipeline edited by Morris Swertz: (diff)
5:48 PM SnpCallingPipeline edited by Morris Swertz: (diff)
5:47 PM SnpCallingPipeline edited by Morris Swertz: (diff)
5:46 PM SnpCallingPipeline edited by Morris Swertz: (diff)

Oct 14, 2010:

11:58 PM SnpCallingPipeline edited by Morris Swertz: (diff)
11:57 PM SnpCallingPipeline edited by Morris Swertz: (diff)
11:57 PM SnpCallingPipeline edited by Morris Swertz: (diff)
11:56 PM SnpCallingPipeline edited by Morris Swertz: (diff)
11:46 PM Blog: First raw reads in; Freerk and Morris Boston to get GATK running created by Morris Swertz

Oct 12, 2010:

1:52 PM ReadingMaterials edited by a.kanterakis: (diff)

Oct 7, 2010:

2:52 PM ImputationPipeline edited by a.kanterakis: (diff)
2:50 PM ImputationPipeline edited by a.kanterakis: (diff)

Oct 5, 2010:

1:25 PM ImputationPipeline edited by a.kanterakis: (diff)

Oct 4, 2010:

2:18 PM SnpCallingPipeline edited by freerkvandijk: (diff)

Sep 26, 2010:

10:17 PM WorkPlan edited by Yurii Aulchenko: (diff)
10:15 PM WorkPlan edited by Yurii Aulchenko: (diff)
10:01 PM MendelianQcPipeline edited by Yurii Aulchenko: (diff)
9:55 PM DeNovoVariationPipelineIdea created by Yurii Aulchenko
9:54 PM DeNovoVariationPipeline edited by Yurii Aulchenko: (diff)
9:42 PM MendelianQcPipelineIdea edited by Yurii Aulchenko: (diff)
9:39 PM TrioAwarePhasingPipeline edited by Yurii Aulchenko: (diff)
9:38 PM MendelianQcPipeline edited by Yurii Aulchenko: (diff)
9:37 PM ChipBasedQcPipeline edited by Yurii Aulchenko: (diff)
9:36 PM TrioAwarePhasingPipelineIdea created by Yurii Aulchenko
9:12 PM TrioAwarePhasingPipeline edited by Yurii Aulchenko: change in structure in accord with other pipelines (diff)
9:01 PM MendelianQcPipeline edited by Yurii Aulchenko: (diff)
9:01 PM MendelianQcPipeline edited by Yurii Aulchenko: (diff)
9:00 PM MendelianQcPipelineIdea created by Yurii Aulchenko
8:29 PM MendelianQcPipeline edited by Yurii Aulchenko: (diff)
8:18 PM ChipBasedQcPipeline edited by Yurii Aulchenko: (diff)
8:17 PM ChipBasedQcPipeline edited by Yurii Aulchenko: (diff)
8:16 PM ChipBasedQcPipeline edited by Yurii Aulchenko: (diff)
8:07 PM ChipBasedQcPipeline edited by Yurii Aulchenko: (diff)
8:04 PM ChipBasedQcPipeline edited by Yurii Aulchenko: (diff)
7:45 PM VcfGtDataFromat edited by Yurii Aulchenko: (diff)
7:44 PM VcfGtDataFormat created by Yurii Aulchenko
7:44 PM ChipBasedQcPipelineIdea edited by Yurii Aulchenko: (diff)
7:36 PM FactorsRelatedToSeqDataQuality created by Yurii Aulchenko
7:35 PM ChipBasedQcPipelineIdea edited by Yurii Aulchenko: (diff)
7:32 PM VcfGtDataFromat created by Yurii Aulchenko
7:30 PM ChipBasedQcPipelineIdea edited by Yurii Aulchenko: (diff)
7:29 PM ChipGtDataFormat created by Yurii Aulchenko
7:24 PM ChipBasedQcPipeline edited by Yurii Aulchenko: added 'burning questions' (diff)
7:14 PM ChipBasedQcPipelineIdea created by Yurii Aulchenko
7:03 PM ChipBasedQcPipeline edited by Yurii Aulchenko: re-structuring the document (diff)

Sep 25, 2010:

4:39 PM lib.zip attached to SnpAnnotationPipeline by Patrick Deelen: lib for AnnotateIntersectionOverview?
7:23 AM WikiStart edited by Morris Swertz: (diff)
6:59 AM SchematicOverview edited by Morris Swertz: (diff)
6:59 AM SchematicOverview edited by Morris Swertz: (diff)

Sep 24, 2010:

9:56 PM TrioAwarePhasingPipeline edited by Yurii Aulchenko: more details added (diff)
9:56 PM DataAnalysisPlan edited by Yurii Aulchenko: (diff)
9:55 PM DataAnalysisPlan edited by Yurii Aulchenko: note added at the end (diff)
9:35 PM MendelianQcPipeline edited by Yurii Aulchenko: few edits + moving TrioAwarePhasingPipeline to separate page (diff)
9:28 PM TrioAwarePhasingPipeline created by Yurii Aulchenko
5:03 PM DeNovoVariationPipeline edited by Yurii Aulchenko: format fix + small update (diff)
4:41 PM SchematicOverview edited by Yurii Aulchenko: eliminating duplicated line (diff)
4:36 PM ProjectOverview edited by Yurii Aulchenko: typos fix (diff)
4:30 PM ProjectOverview edited by Yurii Aulchenko: deleted duplicate line (diff)
10:12 AM WikiStart edited by Yurii Aulchenko: (diff)
10:08 AM WikiStart edited by Morris Swertz: (diff)
10:05 AM WikiStart edited by Morris Swertz: (diff)

Sep 23, 2010:

11:01 PM WikiStart edited by Morris Swertz: (diff)
8:28 PM AnnotateIntersectionOverview.zip attached to SnpAnnotationPipeline by Patrick Deelen: Netbeans project for Annotation tool

Sep 22, 2010:

9:52 PM TracPermissions edited by trac: (diff)
9:52 PM InterTrac edited by trac: (diff)
9:52 PM WikiHtml edited by trac: (diff)
9:52 PM TracUnicode edited by trac: (diff)
9:52 PM TracGuide edited by trac: (diff)
9:52 PM TracQuery edited by trac: (diff)
9:52 PM WikiRestructuredText edited by trac: (diff)
9:52 PM TracRoadmap edited by trac: (diff)
9:52 PM TracIni edited by trac: (diff)
9:52 PM TracAccessibility edited by trac: (diff)
9:52 PM TracNotification edited by trac: (diff)
9:52 PM InterWiki edited by trac: (diff)
9:52 PM TracRevisionLog edited by trac: (diff)
9:52 PM TracUpgrade edited by trac: (diff)
9:52 PM TracSupport edited by trac: (diff)
9:52 PM TracInterfaceCustomization edited by trac: (diff)
9:52 PM TracTickets edited by trac: (diff)
9:52 PM TracPlugins edited by trac: (diff)
9:52 PM TracChangeset edited by trac: (diff)
9:52 PM WikiRestructuredTextLinks edited by trac: (diff)
9:52 PM PageTemplates edited by trac: (diff)
9:52 PM WikiFormatting edited by trac: (diff)
9:52 PM TracReports edited by trac: (diff)
9:52 PM TracBackup edited by trac: (diff)
9:52 PM TracImport edited by trac: (diff)
9:52 PM TracSearch edited by trac: (diff)
9:52 PM TitleIndex edited by trac: (diff)
9:52 PM RecentChanges edited by trac: (diff)
9:52 PM SandBox edited by trac: (diff)
9:52 PM TracRss edited by trac: (diff)
9:52 PM WikiNewPage edited by trac: (diff)
9:52 PM TracModPython edited by trac: (diff)
9:52 PM TracTimeline edited by trac: (diff)
9:52 PM TracLinks edited by trac: (diff)
9:52 PM TracInstall edited by trac: (diff)
9:52 PM TracStandalone edited by trac: (diff)
9:52 PM TracSyntaxColoring edited by trac: (diff)
9:52 PM TracCgi edited by trac: (diff)
9:52 PM TracTicketsCustomFields edited by trac: (diff)
9:52 PM TracBrowser edited by trac: (diff)
9:52 PM TracWorkflow edited by trac: (diff)
9:52 PM TracEnvironment edited by trac: (diff)
9:52 PM TracModWSGI edited by trac: (diff)
9:52 PM CamelCase edited by trac: (diff)
9:52 PM TracRepositoryAdmin created by trac
9:52 PM WikiMacros edited by trac: (diff)
9:52 PM WikiProcessors edited by trac: (diff)
9:52 PM TracFastCgi edited by trac: (diff)
9:52 PM TracNavigation edited by trac: (diff)
9:52 PM TracAdmin edited by trac: (diff)
9:52 PM TracFineGrainedPermissions edited by trac: (diff)
9:52 PM TracWiki edited by trac: (diff)
9:52 PM WikiDeletePage edited by trac: (diff)
9:52 PM TracLogging edited by trac: (diff)
9:52 PM WikiPageNames edited by trac: (diff)
5:34 PM SnpCallingPipeline edited by Leon Mei: (diff)
5:23 PM SnpCallingPipeline edited by Leon Mei: (diff)
5:22 PM SnpCallingPipeline edited by Leon Mei: (diff)
5:22 PM SnpCallingPipeline edited by Leon Mei: (diff)
10:30 AM WikiStart edited by Morris Swertz: (diff)
12:37 AM CoverageAnalysisPipeline edited by Barbera van Schaik: (diff)

Sep 21, 2010:

10:45 PM CoverageAnalysisPipeline edited by Barbera van Schaik: (diff)
10:32 PM Coverage_Varscan_BaseCoverage.png attached to CoverageAnalysisPipeline by Barbera van Schaik: WF call SNPs with varscan, calculate coverage per 50kb and per base
10:31 PM MergeIndexSNPcall.png attached to CoverageAnalysisPipeline by Barbera van Schaik: WF Merge bam files and call SNPs with samtools
10:30 PM BWAparam.png attached to CoverageAnalysisPipeline by Barbera van Schaik: WF Alignment with BWA
10:30 PM splitFastq.png attached to CoverageAnalysisPipeline by Barbera van Schaik
10:30 PM bwaIndexDatabase.png attached to CoverageAnalysisPipeline by Barbera van Schaik: WF Create BWA index on database
10:29 PM CreateGridDirectory.png attached to CoverageAnalysisPipeline by Barbera van Schaik: WF CreateGridDirectory?
8:38 PM SnpAnnotationPipeline edited by Morris Swertz: (diff)
8:36 PM SnpAnnotationPipeline edited by Morris Swertz: (diff)
8:33 PM ImputationPipeline edited by Morris Swertz: (diff)
8:25 PM ImputationPipeline edited by Morris Swertz: (diff)
8:25 PM WikiStart edited by Morris Swertz: (diff)
8:05 PM SnpAnnotationPipeline edited by Morris Swertz: (diff)
8:01 PM ReadingMaterials edited by Morris Swertz: (diff)
8:00 PM Blog: Paper: Pelak et al (2010) PLoS Genet created by Morris Swertz
1:17 PM SnpAnnotationPipeline edited by Morris Swertz: (diff)
1:17 PM SnpAnnotationPipeline created by Morris Swertz

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